Hey, @ggerico. Did you follow the instructions to set up the right libraries? The ones in the book are potentially outdated, so I recommend these ones.
If you still have the problem after following the instructions on progml.com, then it’s something that I should look into. In that case, could you please let me know?
I have used the instruction Installing with Conda from progml.com/setup using the macOS package. I followed the bash commands you mentioned there, they worked well, except for numpy where I had to go to anaconda.org and used conda install -c cctbx202105 numpy instead.
Claudia, thank you for reporting this issue, and sorry that I took so long to reply! At this stage, it’s becoming hard for me to update the instructions for the book. I’ll add a note to the instructions on progml.com, and leave the fix for the next edition.